humanCAT - Genomics Biotools

humanCAT The human ENCODE ChIP Association Tester

humanCAT allows you to easily compare your human (hg19) ChIP peaks from your peak-called BED file with those from most all human ENCODE ChIP peaks from Tier 1 and Tier 2 cell lines.

Peaks that share significantly common genomic binding sites score highly, allowing easy identification of proteins that show similar or identical genomic distributions from those that are distinct.

To use humanCAT

Select below the tissue(s) of interest.
Datasets of ChIP'd proteins with pre-computed data available for these tissues can then be selected for analysis.
Finally, you can simply obtain the association data selected, or upload your own hg19-mapped BED file.

More information on the ChIP Association Tester can be found here.

To use humanCAT

Let's get started!

Select tissue source

Select Cell Lines 786

Select ChIP'd proteins

Select Transcription Factors 0

Select Chromatin Binding Proteins 0

Select Histone Modifying Proteins 0

Select Histone Modifications 0

Select Polymerase 0

Configure Parameters

humanCAT The human ENCODE ChIP Association Tester

More information on the ChIP Association Tester can be found here.

To use humanCAT

Let's get started!

Select tissue source

Select Cell Lines 786

Select ChIP'd proteins

Select Transcription Factors 0

Select Chromatin Binding Proteins 0

Select Histone Modifying Proteins 0

Select Histone Modifications 0

Select Polymerase 0

Configure Parameters